Passage 5: Ribose
Ribose (C5H10O5) is biologically important as the pentose component of
ribonucleotides. It primarily exists in its aldose form, making it highly reactive in
oxidative and reductive conditions.
Ribose’s oxidation to ribonic acid and reduction to ribitol are widely known
transformations of this pentose. In bromine water (Br2 and H2O), ribose is converted
to ribonic acid, and in the presence of sodium borohydride (NaBH4), ribose is
converted to ribitol.
Experiment 1:
Researchers performed the following reactions with ribose under controlled conditions:
Reaction 1:
Ribose + Br2 + H2O → Ribonic acid + 2HBr
Reaction 2:
Ribose + NaBH4 + H2O → Ribitol + NaBO2
Observations:
Following these procedures, the researchers used pH indicators and TLC to monitor
reaction progress/success.
Experiment 2:
In order to map cellular processes that synthesize purines and pyrimidines, ribose
was converted to 5-phosphoribosyl-1-pyrophosphate (PRPP), a precursor for these
nitrogenous bases. This intermediate was then used to synthesize a compound that
is structurally similar to xanthine, a derivative of a purine:
Reaction 3:
Ribose-5-Phosphate + ATP → PRPP + AMP
Reaction 4:
PRPP + Amine → Xanthine Derivative
Experiment 3:
In an effort to further explore the reactivity of xanthine derivatives and extrapolate
to biological systems and biochemical reactions, they used their synthesized
xanthine derivative and reacted with alcohol to form an ether. Reaction progress
was monitored via TLC and confirmation of desired product was determined via
NMR. UV-Vis spectroscopy was conducted before NMR to ensure that a chemical
reaction had indeed occurred, because the former analytical technique is
significantly less expensive.
Two ribose molecules undergo an aldol addition reaction. Which of the
following are true about the product after the initial addition step prior to the
addition of heat?
A) A. A β-hydroxy aldehyde with an empirical formula of C5H9O5
B) B. A β-hydroxy ketone with an empirical formula of C5H9O5
C) C. A β-hydroxy aldehyde with an empirical formula of C5H10O5
D) D. A β-hydroxy ketone with an empirical formula of C5H10O5
Correct answer: C. An aldol addition reaction, prior to the elimination
of water due to the addition of heat, results in a β-hydroxy aldehyde or ketone,
depending on the starting reagents. If the electrophile in the addition step is a
carbonyl carbon that is part of a ketone group, the result will be a β-hydroxy ketone,
but if the electrophile in the addition step is a carbonyl carbon that is part of an
aldehyde group, the result will be a β-hydroxy aldehyde. In this case, two ribose
molecules (both aldehydes) undergo aldol addition, so the result is a β-hydroxy
aldehyde, and B and D are incorrect. The overall product has the overall formula
C10H20O10, so the empirical formula is C5H10O5.